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Computer
Course 3
November 13, 18-20 |
e ) Priciples for thermodynamic modelling
of microbial reactions
- Application of a simple calculation model (Excel spread sheet)
- Thermodynamic laws and the calculation of free energies
- Range of applicability of thermodynamic principles in microbial energetics
- Free energies of reactions: terms, definitions and abbreviations
- Application of thermodynamics in ecological processes:
- Direction and probability of reactions, exergonic and endergonic reactions
- Alterations of Gr by microbially mediated processes
- Influence of pH and temperature on Gr
- Microbial activities which change the ion activity product and the solubility
of minerals
- Activities which alter redox conditions (pe)
Exercises in the Course Folder on OLAT
f ) Examples to thermodynamic modelling
- Aerobic and anaerobic oxidation of ammonia
- The missing link: ammonia-based photosynthesis
- Acetogenic and sulfidogenic methanol utilization
- Chemolithoautotrophic growth with reduced S-compounds & nitrate as electron
acceptor: Thioploca sp.
- Interactions in anaerobic communities: a thermodynamic perspective
- Syntrophobacter wolinii in association with hydrogenotrophs: predictions
based on thermodynamics
- Thermochemical energy yield from substrate oxidation with different oxidants
- Anaerobic methane oxidation: a missing organism ?
- Growth efficiency of methanogens
- Alteration of halogenated hydrocarbons through halorespiration
Exercises in the Course Folder on OLAT
g ) Dynamic simulation and modelling of microbial processes
- Introduction to Matlab und Simulink
- Designing simple pool models
- Simulation of microbial growth
- Interactions in microbial communities
- Exchanges between sedimentary phosphate pools
- Advanced photosynthesis model
Exercises in the Course Folder on OLAT
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microeco
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