Computer Course 3
December 13
 
e ) Priciples for thermodynamic modelling of microbial reactions
  • Application of a simple calculation model (Excel spread sheet).
  • Thermodynamic laws and the calculation of free energies.
  • Range of applicability of thermodynamic principles in microbial energetics.
  • Free energies of reactions: terms, definitions and abbreviations.
  • Application of thermodynamics in ecological processes:
    • Direction and probability of reactions, exergonic and endergonic reactions,
    • Alterations of Gr by microbially mediated processes,
    • Influence of pH and temperature on Gr,
    • Microbial activities which change the ion activity product and the solubility of minerals,
  • Activities which alter redox conditions (pe).
f ) Examples to thermodynamic modelling
  • Aerobic and anaerobic oxidation of ammonia.
  • The missing link: ammonia-based photosynthesis.
  • Acetogenic and sulfidogenic methanol utilization.
  • Chemolithoautotrophic growth with reduced S-compounds & nitrate as electron acceptor: Thioploca sp.
  • Interactions in anaerobic communities: a thermodynamic perspective.
  • Syntrophobacter wolinii in association with hydrogenotrophs: predictions based on thermodynamics.
  • Thermochemical energy yield from substrate oxidation with different oxidants.
  • Anaerobic methane oxidation: a missing organism ?
  • Growth efficiency of methanogens.
  • Alteration of halogenated hydrocarbons through halorespiration.
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